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This is the structure of an RNA pseudoknot (437D)

Pseudoknot cartoon

The hairpin stem, in blue and cyan, is hard to pick out because the duplex is A-form and short.
Show me the stem

Extrahelical bases


Non-Watson-Crick interactions stabilize tertiary structure:
(C8-A12) Pairing with in the loop
(G7-A24) A24 in lariat contacts G in a GC pair via its Hoogsteen face
(C15-A23) A23 contacts C15 via base and sugar contacts
(C10-G28) A Watson-Crick base pair in a non-traditional helical structure