Jianhan Chen Research Group Computational Biophysics and Biomaterials Home Publications Research Teaching People News Links How to Succeed in Graduate School (want even more tips?) How to be a Winner (by Andre DeHon, a computer scientist) Graduate students do not have to be amateur researchers. How to Succeed in Graduate School: A Guide for Students and Advisors (PDF) The 5 'Virtues' of Successful Graduate Students (Thomas H. Benton, Chronicle of Higher Education) How to Be a Good Graduate Student (Marie desJardins, Indiana University) How to apply to UMass Chemistry Graduate Program Molecular & Cellular Biology Graduate Program Computational Resources Group GPU Cluster: Pikes: 40 nodes w/ a total of 240 GPUs, 120 8-core Xeon CPUs and 400TB storage. Group Workstations: ~10 GPU workstations w/ ~150 cores, 16 GPUs, and ~150TB storage. IALS GPU Cluster: as part of Unity, 33 nodes (8x 2080Ti per node) UMass Shared Cluster (14,376 cores) (Current Usage) Beocat Linux Cluster (KSU) (~8,000 cores) (an "artistic" rendering) Molecular Modeling Basics Introduction to Macromolecular Simulation (Peter J. Steinbach, NIH) Moledular Dynamics from Wikipedia Introduction to Molecular Modeling (MacCammon Lab, UCSD) Molecular Dynamics Simulations (using) CHARMM (Stote Lab, Université Louis Pasteur) A Molecular Dynamics Primer (Furio Ercolessi, University of Udine, Italy) A list of essential reading materials for serious professionals. Molecular Dynamics Tools CHARMM Home CHARMM-GUI (Im Lab) MMTSB (Brooks Lab) NAMD (UIUC/TCB) Amber (Case Lab) GROMACS (Berendsens) Modeling Workshops with Tutorials CTBP Summer Workshop '04 (broad coverage of theory and computation in biophysics) MMTSB/CTBP Workshop '06 (mainly on CHARMM/MMTSB Tool Set) CHARMM Tutorial (Ahlam's favorite!) Molecular Visualization RasMol (fast and neat) VMD (UIUC, powerful) Online Lectures MIT World The Science Network Photos San Diego Area (1)     Travel Photos (1) KSU Campus (1)    Konza Prairie (1)    Fall Colors    Ice Storm    Spring on Campus    Miscellaneous links Home sweet hometown: Putian City Old pages @ UC-Irvine   Chat with God   Tips of Happiness   Today is the beginning for the rest of your life. | LSL S585 | IALS | Chemistry | Biochem & Mol Biol | UMass Amherst